论文标题
力光谱期间仿生聚合物的通用展开
The Generic Unfolding of a Biomimetic Polymer during Force Spectroscopy
论文作者
论文摘要
在力光谱的帮助下,几种分析理论旨在估计各种蛋白质折叠的速率系数。然而,主要的瓶颈在于一个事实,即关于力量通常如何扰乱晶体圈过渡的事实仍然没有完美的共识。因此,我们工作的目的是阐明大多数蛋白质在力光谱中的通用行为。换句话说,任意蛋白质的速率系数与施加力的函数表现出什么一般签名?通过在分子模拟中采用仿生聚合物,我们专注于评估其各自的活化能以展开,同时拉出各对单体。最重要的是,我们发现在无力的场景附近,这种激活能具有负斜率和负曲率,这是施加力的函数。我们的工作与最新的展开理论一致,这表明大多数蛋白质的签名是预期的,因此,我们进一步重申,许多经典公式估计了晶体线圈过渡的速率系数,这是不够的。此外,我们在这里还提出了一个分析表达式,实验者可以用于近似激活能量进行展开。重要的是,它基于测量所拉的珠子之间距离的均值和方差。总而言之,我们的工作为蛋白质折叠带来了力量光谱法的有趣视图。
With the help of force spectroscopy, several analytical theories aim at estimating the rate coefficient of folding for various proteins. Nevertheless, a chief bottleneck lies in the fact that there is still no perfect consensus on how does a force generally perturb the crystal-coil transition. Consequently, the goal of our work is in clarifying the generic behavior of most proteins in force spectroscopy; in other words, what general signature does an arbitrary protein exhibit for its rate coefficient as a function of the applied force? By employing a biomimetic polymer in molecular simulations, we focus on evaluating its respective activation energy for unfolding, while pulling on various pairs of its monomers. Above all, we find that in the vicinity of the force-free scenario, this activation energy possesses a negative slope and a negative curvature as a function of the applied force. Our work is in line with the most recent theories for unfolding, which suggest that such a signature is expected for most proteins, and thus, we further reiterate that many of the classical formulae, that estimate the rate coefficient of the crystal-coil transition, are inadequate. Besides, we also present here an analytical expression which experimentalists can use for approximating the activation energy for unfolding; importantly, it is based on measurements for the mean and variance of the distance between the beads which are being pulled. In summary, our work presents an interesting view for protein folding in force spectroscopy.