论文标题

神经分子计算逻辑门的星形胶质细胞的工程钙信号传导

Engineering Calcium Signaling of Astrocytes for Neural-Molecular Computing Logic Gates

论文作者

Barros, Michael Taynnan, Doan, Phuong, Kandhavelu, Meenakshisundaram, Jennings, Brendan, Balasubramaniam, Sasitharan

论文摘要

本文建议使用真核细胞,即星形胶质细胞发展逻辑大门。逻辑门是通过根据输入信号在单元格之间的Ca $^{2+} $ ion流的阈值来实现的。通过使用PCDNA3.1-HGPR17基因来设计星形胶质细胞的湿LAB实验,我们表明,可以通过控制流经人群流动的CA $^{2+} $来实现这两个基因。论文中还提供了一个增强的学习平台,以优化两个主要参数,分别是CA $^{2+} $激活阈值和输入信号的时间插槽$ t_b $进入门口。该设计平台通过考虑细胞之间的信号传导产生的延迟和噪声来迎合细胞总数的任何大小和连通性,以微调激活阈值和输入信号时间插槽参数。为了验证增强学习平台的有效性,使用CA $^{2+} $基于信号的分子通信模拟器来模拟星形胶质细胞之间的信号传导。模拟的结果表明,CA $^{2+} $激活阈值和输入信号的时间插槽$ t_b $都需要达到最佳计算准确性,其中最高为90 \%的准确性,可以通过正确的值组合来实现90 \%的准确性。工程星形胶质细胞创建数字逻辑门的增强学习平台可用于未来的神经分子计算芯片,该芯片可以彻底改变由工程生物细胞构建的大脑植入物。

This paper proposes the use of Eukaryotic cells, namely astrocytes, to develop logic gates. The logic gates are achieved by manipulating the threshold of Ca$^{2+}$ ion flows between the cells, based on the input signals. Through wet-lab experiments that engineer the astrocytes cells with pcDNA3.1-hGPR17 genes, we show that both AND and OR gates can be implemented by controlling Ca$^{2+}$ signals that flow through the population. A reinforced learning platform is also presented in the paper to optimize two main parameters, which are the Ca$^{2+}$ activation threshold and time slot of input signals $T_b$ into the gate. This design platform caters for any size and connectivity of the cell population, by taking into consideration the delay and noise produced from the signalling between the cells, in order to fine-tune the activation threshold and input signal time slot parameters. To validate the effectiveness of the reinforced learning platform, a Ca$^{2+}$ Signalling-based Molecular Communications Simulator was used to simulate the signalling between the astrocyte cells. The results from the simulation showed that an optimum value for both the Ca$^{2+}$ activation threshold and time slot of input signals $T_b$ is required to achieve optimal computation accuracy, where up to 90\% accuracy for both the AND and OR gates can be achieved with the right combination of values. The reinforced learning platform for the engineered astrocytes to create digital logic gates can be used for future Neural-Molecular Computing chip, which can revolutionize brain implants that are constructed from engineered biological cells.

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