论文标题

在临床应用中为现成的统计形状建模工具进行基准测试

Benchmarking off-the-shelf statistical shape modeling tools in clinical applications

论文作者

Goparaju, Anupama, Bone, Alexandre, Hu, Nan, Henninger, Heath B., Anderson, Andrew E., Durrleman, Stanley, Jacxsens, Matthijs, Morris, Alan, Csecs, Ibolya, Marrouche, Nassir, Elhabian, Shireen Y.

论文摘要

统计形状建模(SSM)被广泛用于生物学和医学中,作为新一代的形态学方法,用于对解剖形状进行定量分析。体内成像的技术进步导致了开源计算工具的开发,该工具可以自动化解剖形状的建模及其种群级别的变异性。但是,在依赖形态定量(例如植入物设计和病变筛查)的临床应用中评估和验证此类工具的评估和验证几乎没有完成。在这里,我们系统地评估了广泛使用的最先进的SSM工具的结果,即Shapeworks,Deftormetrica和Spharm-PDM。我们使用定量和定性指标来评估不同工具的形状模型。我们提出了用于解剖学地标/测量推理和病变筛查的验证框架。我们还提出了一种病变筛选方法,可以客观地表征相对于学习的人群级别的控制统计,形状变化的变化。结果表明,SSM工具显示出不同级别的一致性,与SPHARM-PDM的模型相比,由于估计表面对应关系的方法,ShapeWorks和Formormetrica模型与Spharm-PDM的模型相比更加一致。此外,发现与SPHARM-PDM模型相比,发现塑形和变形形状模型可捕获临床相关的人群水平变异性。

Statistical shape modeling (SSM) is widely used in biology and medicine as a new generation of morphometric approaches for the quantitative analysis of anatomical shapes. Technological advancements of in vivo imaging have led to the development of open-source computational tools that automate the modeling of anatomical shapes and their population-level variability. However, little work has been done on the evaluation and validation of such tools in clinical applications that rely on morphometric quantifications (e.g., implant design and lesion screening). Here, we systematically assess the outcome of widely used, state-of-the-art SSM tools, namely ShapeWorks, Deformetrica, and SPHARM-PDM. We use both quantitative and qualitative metrics to evaluate shape models from different tools. We propose validation frameworks for anatomical landmark/measurement inference and lesion screening. We also present a lesion screening method to objectively characterize subtle abnormal shape changes with respect to learned population-level statistics of controls. Results demonstrate that SSM tools display different levels of consistencies, where ShapeWorks and Deformetrica models are more consistent compared to models from SPHARM-PDM due to the groupwise approach of estimating surface correspondences. Furthermore, ShapeWorks and Deformetrica shape models are found to capture clinically relevant population-level variability compared to SPHARM-PDM models.

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