论文标题
分配流量,用于订单受限的OCT分割
Assignment Flow for Order-Constrained OCT Segmentation
论文作者
论文摘要
目前,光学相干断层扫描(OCT)是最常用的非侵入性成像方法之一,用于获取大量体积扫描人类视网膜组织和脉管系统。为了从提取的OCT卷中解决决定性信息并使之适用于进一步的诊断分析,对视网膜层厚度的确切识别是为每个患者分别完成的必不可少的任务。但是,连续对多个OCT扫描的手动检查是一项艰巨且耗时的任务,这导致了漫长的资格过程,并且在存在组织依赖性斑点噪声的情况下经常混淆。因此,自动分割模型的阐述已成为医学图像处理领域的重要任务。我们提出了一种新颖的,纯粹的数据驱动的\ textIt {几何方法,用于订单约束3D OCT视网膜细胞层分割},该}在任何度量空间中作为输入数据,并与可以并行计算的基本操作一起使用。与许多已建立的视网膜检测方法相比,我们提出的配方避免了任何形状的使用,并以纯粹的几何方式完成了视网膜的自然顺序。这使该方法无偏见,因此适合检测视网膜组织结构的局部解剖变化。为了证明所提出的方法的鲁棒性,我们比较了一个手动注释的健康人视网膜3D十月体积的数据集的两种不同选择。就平均绝对误差和骰子相似性系数而言,将计算分割的质量与最新技术的质量进行了比较。结果表明,将我们的方法应用于患病视网膜分类的巨大潜力,并为视网膜细胞层和血管结构的联合分割打开了新的研究方向。
At the present time Optical Coherence Tomography (OCT) is among the most commonly used non-invasive imaging methods for the acquisition of large volumetric scans of human retinal tissues and vasculature. To resolve decisive information from extracted OCT volumes and to make it applicable for further diagnostic analysis, the exact identification of retinal layer thicknesses serves as an essential task be done for each patient separately. However, the manual examination of multiple OCT scans in a row is a demanding and time consuming task, which results in a lengthy qualification process and is frequently confounded in the presence of tissue-dependent speckle noise. Therefore, the elaboration of automated segmentation models has become an important task in the field of medical image processing. We propose a novel, purely data driven \textit{geometric approach to order-constrained 3D OCT retinal cell layer segmentation} which takes as input data in any metric space and comes along with basic operations that can be effectively computed in parallel. As opposed to many established retina detection methods, our presented formulation avoids the use of any shape prior and accomplishes the natural order of the retina in a purely geometric way. This makes the approach unbiased and hence suited for the detection of local anatomical changes of retinal tissue structure. To demonstrate robustness of the proposed approach, we compare two different choices of features on a data set of manually annotated 3D OCT volumes of healthy human retina. The quality of computed segmentations is compared to the state of the art in terms of mean absolute error and the Dice similarity coefficient. The results indicate a great potential for applying our method to the classification of diseased retina and opens a new research direction regarding the joint segmentation of retinal cell layers and blood vessel structures.