论文标题

病毒 - 宿主相互作用形成病毒分散,从而导致空间扩张中不同类别的行进波

Virus-host interactions shape viral dispersal giving rise to distinct classes of travelling waves in spatial expansions

论文作者

Hunter, Michael, Krishnan, Nikhil, Liu, Tongfei, Möbius, Wolfram, Fusco, Diana

论文摘要

长期以来,反应扩散波一直用于描述经历空间范围扩展的种群的生长和扩散。这样的波通常被归类为拉动,在动力学是由前部的尖端驱动的,随机波动较高或推动,在这种情况下,生长或分散的合作会导致大量驱动的波动,其中抑制了波动。这些概念已经在合作导致密度依赖增长率的人群中对实验进行了很好的研究。相比之下,对于表现出密度依赖性散布的实验人群,相对较少。 使用噬菌体T7作为测试生物,我们提出了新的实验测量结果,这些测量表明,噬菌体T7在宿主大肠杆菌的草坪中的扩散受到与宿主细菌细胞的空间相互作用的阻碍。病毒感染引起的宿主密度,噬菌体扩散和细胞裂解之间的耦合导致有效密度依赖性扩散系数类似于合作行为。使用反应扩散方程系统,我们表明这种效果可以导致从拉动到推动的扩展的过渡。此外,我们发现第二种独立的密度依赖性对噬菌体分散的作用是由于病毒孵育期而自发出现的,在此期间,噬菌体被困在宿主无法分散的宿主内部。基于随机剂的其他模拟表明,裂解时间极大地影响了病毒膨胀的多样性损失率。综上所述,我们的结果表明,噬菌体可以用作可控的实验室人群来研究密度依赖性分散对进化的影响,遗传多样性和扩展病毒种群的适应性可能比当前假设的要大得多。

Reaction-diffusion waves have long been used to describe the growth and spread of populations undergoing a spatial range expansion. Such waves are generally classed as either pulled, where the dynamics are driven by the very tip of the front and stochastic fluctuations are high, or pushed, where cooperation in growth or dispersal results in a bulk-driven wave in which fluctuations are suppressed. These concepts have been well studied experimentally in populations where the cooperation leads to a density-dependent growth rate. By contrast, relatively little is known about experimental populations that exhibit density-dependent dispersal. Using bacteriophage T7 as a test organism, we present novel experimental measurements that demonstrate that the diffusion of phage T7, in a lawn of host E. coli, is hindered by steric interactions with host bacteria cells. The coupling between host density, phage dispersal and cell lysis caused by viral infection results in an effective density-dependent diffusion coefficient akin to cooperative behavior. Using a system of reaction-diffusion equations, we show that this effect can result in a transition from a pulled to pushed expansion. Moreover, we find that a second, independent density-dependent effect on phage dispersal spontaneously emerges as a result of the viral incubation period, during which phage is trapped inside the host unable to disperse. Additional stochastic agent-based simulations reveal that lysis time dramatically affects the rate of diversity loss in viral expansions. Taken together, our results indicate both that bacteriophage can be used as a controllable laboratory population to investigate the impact of density-dependent dispersal on evolution, and that the genetic diversity and adaptability of expanding viral populations could be much greater than is currently assumed.

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