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Avoiding aliasing in time-resolved flow data obtained through high fidelity simulations while keeping the computational and storage costs at acceptable levels is often a challenge. Well-established solutions such as increasing the sampling rate or low-pass filtering to reduce aliasing can be prohibitively expensive for large data sets. This paper provides a set of alternative strategies for identifying and mitigating aliasing that are applicable even to large data sets. We show how time-derivative data, which can be obtained directly from the governing equations, can be used to detect aliasing and to turn the ill-posed problem of removing aliasing from data into a well-posed problem, yielding a prediction of the true spectrum. Similarly, we show how spatial filtering can be used to remove aliasing for convective systems. We also propose strategies to prevent aliasing when generating a database, including a method tailored for computing nonlinear forcing terms that arise within the resolvent framework. These methods are demonstrated using a non-linear Ginzburg-Landau model and large-eddy simulation (LES) data for a subsonic turbulent jet.