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Federated Learning has become an important learning paradigm due to its privacy and computational benefits. As the field advances, two key challenges that still remain to be addressed are: (1) system heterogeneity - variability in the compute and/or data resources present on each client, and (2) lack of labeled data in certain federated settings. Several recent developments have tried to overcome these challenges independently. In this work, we propose a unified and systematic framework, \emph{Heterogeneous Self-supervised Federated Learning} (Hetero-SSFL) for enabling self-supervised learning with federation on heterogeneous clients. The proposed framework allows collaborative representation learning across all the clients without imposing architectural constraints or requiring presence of labeled data. The key idea in Hetero-SSFL is to let each client train its unique self-supervised model and enable the joint learning across clients by aligning the lower dimensional representations on a common dataset. The entire training procedure could be viewed as self and peer-supervised as both the local training and the alignment procedures do not require presence of any labeled data. As in conventional self-supervised learning, the obtained client models are task independent and can be used for varied end-tasks. We provide a convergence guarantee of the proposed framework for non-convex objectives in heterogeneous settings and also empirically demonstrate that our proposed approach outperforms the state of the art methods by a significant margin.